Tubulin & FtsZ Products

About Tubulin

This section is intended for those researchers who are not accustomed to working with Tubulin protein in vitro. Below we have outlined some of the basic priniciples involved in microtubule formation and how you can manipulate experimental conditions according to your needs. More detailed information is described in the manuals of individual Tubulin products and tubulin based Biochem™ Kits. or CYTODYNAMIX™ screens

Introduction
Tubulin is composed of a heterodimer of two closely related 55 kDa proteins called α and β tubulin. These two proteins are encoded by separate genes, or small gene families, whose sequences are highly conserved throughout the eukaryotic kingdom. Consequently, tubulin isolated from porcine brain tissue is highly homologous to tubulin isolated from any eukaryotic source. In biochemical terms, this fact results in the technical benefit that porcine tubulin (in the form of microtubules, see below) can be used to assay tubulin associated proteins originating from many diverse species, e.g.: yeast (1,2,3) and fruit fly (4,5). However, in pharmacological terms these minor differences can be used to enhance the specificity of drugs for certain diseasse (6).

Tubulin heterodimers polymerize to form microtubules.
Tubulin polymerizes to form structures called microtubules (MTs). When tubulin polymerizes it initially forms protofilaments, microtubules consist of 13 protofilaments and are 25 nm in diameter, each µm of microtubule length being composed of 1650 heterodimers. Microtubules are highly ordered fibers that have an intrinsic polarity, shown schematically in figure A. Tubulin can polymerize from both ends in vitro, however, the rate of polymerization is not equal. It has therefore become the convention to call the rapidly polymerizing end the plus-end of a microtubule and the slowly polymerizing end the minus-end. In vivo the plus end of a microtubule is distal to the microtubule organizing center.

A                                                                       B      

A) Schematic representation of a microtubule. B) Electron micrograph of in vitro assembled bovine microtubules (11,000 x magnification).


Tubulin polymerization can be followed by using a spectrophotometer.
The ability of tubulin to polymerize into microtubules can be followed very simply by observing an increase in optical density of a tubulin solution at OD340 nm. An example of three standard specrophotometry readings during tubulin polymerization is shown below:

Microtubule assembly characteristics; as determined by absorbance at 340 nm.
Method: Tubulin (5 mg/ml) in G-PEM buffer pH 6.8 plus 10% glycerol was incubated at 35°C in a cuvette. The optical density at 340 nm was taken at time intervals. A value of 0.8 OD unit indicates that >90% of the tubulin has polymerized.

Determining the type of polymerization conditions that are necessary for your experiment.
The intrinsic ability of pure tubulin to polymerize in vitro is very much a function of the experimental conditions. For example, one can manipulate the polymerization reaction to give microtubules of a particular mean length distribution or create conditions under which tubulin will not polymerize at all until an 'enhancer' component, such as a polymerization stimulating drug or protein, is added. The following section briefly describes how and why we can regulate the polymerization reaction. A more detailed description of polymerization conditions is given with all our products.

Glycerol can stimulate tubulin polymerization.
The propensity of tubulin subunits to assemble into MTs is dependent upon their affinity for MT ends. In order to achieve microtubule polymerization the value of this affinity (called the critical concentration, CC) has to be less than the total tubulin concentration. Because of this parameter, pure tubulin will not generally polymerize at protein concentrations below 10 mg/ml. At concentrations above the CC, tubulin will polymerize until the free subunit concentration is equal to the CC value.

In situations where one simply requires a population of microtubules it is possible to reduce the CC and force nearly all of the tubulin to polymerize. This is achieved by including in the reaction a component that will lower the CC. Glycerol is one of the most commonly used substances that lowers the CC value for polymerization. By including 10% glycerol in a polymerization reaction one can achieve microtubule formation at protein concentrations as low as 1 - 2 mg/ml. We sell tubulin without glycerol (Cat. # T240), which needs to be resuspended in G-PEM with 10% glycerol to create a solution which will polymerize efficiently on placing at 37°C.

In situations where one is interested in investigating the ability of a compound to enhance tubulin polymerization it might be advisable to use tubulin in a buffer that is free of any polymerization stimulating compounds such as glycerol. We sell tubulin minus glycerol (Cat. # T240 and HTS03), which are useful for screening compounds for anti-cancer use. There are also tubulin polymerization assay kits which have all the proteins, buffers and controls in order to effectively analyze compounds and MAP type proteins (Cat.# BK006P and BK011P).

Uses of modified tubulin.
In certain cases it is desirable or necessary to use modified tubulin protein. We sell fluorescently labeled tubulin that is useful in the study of microtubule dynamics by allowing one to follow the fate of injected tubulin in vivo (AMCA-labeled tubulin; Cat. # TL440M, HiLyte Fluor^TM 488 labeled tubulin; Cat. # TL488M, rhodamine labeled tubulin; Cat. # TL590M, X-rhodamine labeled tubulin; Cat. # TL620M) and HiLyte Fluor^TM 647 labeled tubulin; Cat. # TL670M. Fluorescent tubulin also has applications for in vitro assays, e.g., microtubule motor assays (see Fluorescent microtubule mobility assay kits, Cat. # BK027).

Microtubules can be stabilized by taxol and non-hydrolyzable analogs of GTP.
Microtubule polymerization is readily reversible, a given population of microtubules will be continually growing and shortening. This phenomenon has been termed ' dynamic instability '. However, on a practical level, microtubules can easily be stabilized by the addition of non-hydrolysable analogues of GTP ( eg. GMPPCP ) or, more commonly, by drugs such as paclitaxel/taxol. In the presence of 10 µM paclitaxel (Cat.# TXD01) microtubules are stable at room temperature for many hours. This ability to suppress microtubule dynamics is often an important consideration when designing an experiment in which stable microtubules are required.

References:
1. Hyman, A.A., Middleton, K., Centola, M., Mitchison, T.J., and Carbon, J. Microtubule-motor activity of a yeast centromere-binding protein complex. Nature 359, 533-536 (1992).

2. Jiang,W., Middleton, K., Yoon, H., Fouquet, C., and Carbon, J. An essential Yeast protein, CBF5, binds in vitro to centromeres and microtubules. Mol. Cell. Biol. 13, 4884-4893 (1993).

3. Barnes, G., Louie, K.A., and Botstein, D. Yeast proteins associated with microtubules in vitro and in vivo. Mol. Biol. Cell. 3, 29-47 (1992).

4. Walker, R.A., Salmon, E.D., and Endow, S.A. The Drosophila claret segregation protein is a minus-end directed motor molecule. Nature 347, 780-782 (1990).

5. Zhang, P., Knowles, B., Goldstein, L.S., and Hawley, R.S. A kinesin-like protein required for distributive chromosome segregation in Drosophila. Cell. 62, 53-62 (1990).

6. Davis A, Martinez S, Nelson D. and Middleton K. 2009.

Cytoskeleton's tubulin products have been cited hundreds of times over the past 18 years. A select few are described here, for more citations on individual products please use the "Citations" tab on each individual product page.

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Question 1:  What is the physiological form of tubulin?

Question 2:  What kits are available to study my protein of interest?

Question 3:  What assays are available to screen compounds for anti-microtubule activity?

Question 1: What is the physiological form of tubulin? 

Answer 1: The basic physiological unit of tubulin is the heterodimer, composed of 1 alpha and 1 beta subunit (aka alpha and beta tubulin).  A true monomer (either 1 alpha or 1 beta subunit) is unstable in vitro and is not known to exist under in vivo conditions. Molecular weight of the heterodimeric subunit is 110,000 daltons, whereas each monomer is 55,000 daltons.

Question 2: What kits are available to study my protein of interest?

Answer 2: Cytoskeleton, Inc. offers a variety of kits to study how a protein of interest interacts with and affects tubulin.  To examine if a protein is a microtubule binding protein (MAP), we offer the microtubule binding protein spin-down assay biochem kit (Cat. # BK029).  This kit provides clear instructions and all the reagents and controls necessary to determine the ability of a given protein to bind to tubulin monomers versus tubulin polymers (microtubules).  Tubulin binding can be measured by using a spin down assay where centrifugation is used to separate microtubules from tubulin monomers by differential sedimentation. 

We also offer absorbance and fluorescence-based tubulin polymerization assay Biochem Kits (Cat. # BK006P or BK011P, respectively) to follow polymerization kinetics.  There are many proteins and drugs that either enhance or inhibit polymerization.  These compounds can be characterized by their effect on one or more of the three stages of tubulin polymerization: nucleation, growth, and steady-state equilibrium.  A compound’s effects on depolymerization can also be evaluated.

We also offer kits that provide a convenient means of producing either fluorescently-labeled (Cat. # BK007R) or unlabeled (Cat. # BK015) microtubules for those researchers new to the tubulin field.  Additionally, the microtubule/tubulin in vivo assay kit (Cat. # BK038) offers a straightforward method for quantitating the in vivo ratio of tubulin polymers to monomers.  This kit allows the researcher to easily analyze changes in tubulin monomers and polymers induced by their protein of interest in cell or tissue samples.

To examine if your protein of interest affects how microtubules interact with kinesins, Cytoskeleton also offers ATPase assays that quantify the levels of inorganic phosphate production by microtubule-activated kinesin ATPase activity.  An end-point (Cat. # BK053) and kinetic (Cat. # BK060) kit is offered.

To examine site-specific competition for binding sites on tubulin, Cytoskeleton offers the tubulin ligand competition assay (Cat. # CDS15-P).  This kit allows for the screening and identification of new compounds that bind to known sites on the tubulin molecule. 

Question 3: What assays are available to screen compounds for anti-microtubule activity?

Answer 3: Cytoskeleton, Inc. supplies multiple kits that can be used to examine a compound’s anti-microtubule activity.  We offer absorbance and fluorescence-based tubulin polymerization assay Biochem Kits (Cat. # BK006P or BK011P, respectively) to follow polymerization kinetics.  The polymerization kits can be used to evaluate a compounds’s ability to induce microtubule depolymerization or impair polymerization.  We also offer kits that provide a convenient means of producing either fluorescently-labeled (Cat. # BK007R) or unlabeled (Cat. # BK015) microtubules.  These microtubules can then be incubated with compounds and changes in the length and number of microtubules can be quantified.  Additionally, the microtubule/tubulin in vivo assay kit (Cat. # BK038) offers a straightforward method for quantitating the in vivo ratio of tubulin polymers to monomers.  This kit allows the researcher to easily analyze changes in tubulin monomers and polymers induced by various treatment conditions in cell or tissue samples.